STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107081651ELM2 and Myb/SANT-like domain containing 1a. (1076 aa)    
Predicted Functional Partners:
dnttip1
Ubiquitin-conjugating enzyme E2C.
    
 
 0.900
LOC107097540
Uncharacterized protein.
    
 
 0.800
LOC107084129
Uncharacterized protein.
    
 
 0.638
cdyl
Chromodomain protein, Y-like.
    
 
 0.531
CDYL2
Chromodomain Y like 2.
    
 
 0.531
dmap1
DNA methyltransferase 1 associated protein 1.
    
   0.526
LOC107101873
5-phosphohydroxy-L-lysine phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
   0.469
etnppl
Ethanolamine-phosphate phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
   0.469
ogfr
Opioid growth factor receptor.
    
   0.459
mrgbp
MRG/MORF4L binding protein.
    
   0.459
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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