STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001516Uncharacterized protein. (324 aa)    
Predicted Functional Partners:
LOC107101479
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
   
 0.988
LOC107089263
CD40 ligand; Belongs to the tumor necrosis factor family.
   
 0.966
LOC107093404
TNF superfamily member 14; Belongs to the tumor necrosis factor family.
   
 
  0.906
LOC107090491
Uncharacterized protein.
  
  
 
0.904
ENSCVAP00000001527
Tumor necrosis factor receptor superfamily, member 11b.
  
  
 
0.902
LOC107095892
Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.
    
 0.861
LOC107101899
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
   
 0.716
LOC107103845
Tumor necrosis factor a (TNF superfamily, member 2).
   
 0.464
tnfrsf11a
Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.
   
 0.450
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.