Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hdhd2Haloacid dehalogenase-like hydrolase domain containing 2. (259 aa)    
Predicted Functional Partners:
rnf216
Ring finger protein 216.
      
 0.720
ENSCVAP00000031729
WD_REPEATS_REGION domain-containing protein.
      
 0.610
tmem267
Transmembrane protein 267.
      
 0.607
ttc38
Tetratricopeptide repeat domain 38.
      
 0.606
ENSCVAP00000010828
Claudin 23a.
      
 0.501
carm1
Coactivator-associated arginine methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
      
 0.501
abhd14b
Abhydrolase domain containing 14B.
     
 0.485
abhd14a
Abhydrolase domain containing 14A.
     
 0.485
smim7
Small integral membrane protein 7.
      
 0.469
nadk2
NAD kinase 2, mitochondrial.
      
 0.468
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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