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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdhd2Haloacid dehalogenase-like hydrolase domain containing 2. (259 aa)    
Predicted Functional Partners:
Hells
Helicase, lymphoid specific.
      
 0.516
snx5
Sorting nexin; Involved in several stages of intracellular trafficking.
      
 0.493
SLCO3A1
Solute carrier organic anion transporter family member.
      
 0.491
LOC107087254
Solute carrier organic anion transporter family member.
      
 0.491
Slc40a1
Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.
      
 0.485
klf5
Progesterone immunomodulatory binding factor 1.
      
 0.485
atp5pb
ATP synthase peripheral stalk-membrane subunit b.
   
  
 0.484
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
      
 0.483
ndufa9
NADH:ubiquinone oxidoreductase subunit A9a.
   
  
 0.463
psat1
Phosphoserine aminotransferase.
  
 
 0.456
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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