STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ddx6DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. (479 aa)    
Predicted Functional Partners:
dcp1a
Decapping mRNA 1A.
   
 0.989
edc4
Enhancer of mRNA decapping 4.
   
 0.989
edc3
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
   
 0.989
dcp1b
Decapping mRNA 1B.
   
 0.977
lsm1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
   
 0.958
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.948
LOC107094290
LsmAD domain-containing protein.
    
 
 0.942
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
  
 0.938
atxn2
Ataxin 2.
    
 
 0.935
lsm12
LSM12 homolog b.
   
 
 0.931
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.