Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107091186Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (396 aa)    
Predicted Functional Partners:
LOC107096422
Arginine/serine-rich protein 1.
   
 
 0.545
srsf2
Serine and arginine rich splicing factor 2a.
   
 
 0.505
YTHDC2
YTH domain containing 2.
   
 
 0.488
Srrm1
PWI domain-containing protein.
    
 
 0.470
LOC107101433
SRSF protein kinase 1b.
   
 
 0.469
LOC107101350
Protein kinase domain-containing protein.
   
 
 0.469
LOC107100429
Protein kinase domain-containing protein.
   
 
 0.469
srpk3
SRSF protein kinase 3.
   
 
 0.469
LOC107100285
Si:ch211-220i18.4; Belongs to the protein kinase superfamily.
   
 
 0.469
LOC107087489
SRSF protein kinase 1a.
   
 
 0.469
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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