LAMA2 protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LAMA2

Laminin subunit alpha 2. (3021 aa)

Predicted Functional Partners:

ENSCVAP00000004763

0.789

LOC107096811

0.789

lamc2

0.789

lamc1

0.789

ENSCVAP00000012955

0.728

lamb1

0.728

lamb2

0.728

nid2

0.603

nid1

0.585

ENSCVAP00000009772

0.548

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000004763	ENSCVAP00000009772	ENSCVAP00000004763	ENSCVAP00000009772	Laminin N-terminal domain-containing protein.	Laminin N-terminal domain-containing protein.	0.655
ENSCVAP00000004763	ENSCVAP00000012955	ENSCVAP00000004763	ENSCVAP00000012955	Laminin N-terminal domain-containing protein.	Laminin, beta 1b.	0.697
ENSCVAP00000004763	LAMA2	ENSCVAP00000004763	ENSCVAP00000001552	Laminin N-terminal domain-containing protein.	Laminin subunit alpha 2.	0.789
ENSCVAP00000004763	LOC107096811	ENSCVAP00000004763	ENSCVAP00000004784	Laminin N-terminal domain-containing protein.	Laminin, gamma 3.	0.894
ENSCVAP00000004763	lamb1	ENSCVAP00000004763	ENSCVAP00000025117	Laminin N-terminal domain-containing protein.	Laminin, beta 1a.	0.678
ENSCVAP00000004763	lamb2	ENSCVAP00000004763	ENSCVAP00000025754	Laminin N-terminal domain-containing protein.	Laminin, beta 2 (laminin S).	0.678
ENSCVAP00000004763	lamc2	ENSCVAP00000004763	ENSCVAP00000009810	Laminin N-terminal domain-containing protein.	Laminin, gamma 2.	0.446
ENSCVAP00000004763	nid1	ENSCVAP00000004763	ENSCVAP00000002287	Laminin N-terminal domain-containing protein.	Nidogen 1a.	0.599
ENSCVAP00000004763	nid2	ENSCVAP00000004763	ENSCVAP00000006449	Laminin N-terminal domain-containing protein.	Nidogen 2a (osteonidogen).	0.599
ENSCVAP00000009772	ENSCVAP00000004763	ENSCVAP00000009772	ENSCVAP00000004763	Laminin N-terminal domain-containing protein.	Laminin N-terminal domain-containing protein.	0.655
ENSCVAP00000009772	LAMA2	ENSCVAP00000009772	ENSCVAP00000001552	Laminin N-terminal domain-containing protein.	Laminin subunit alpha 2.	0.548
ENSCVAP00000009772	LOC107096811	ENSCVAP00000009772	ENSCVAP00000004784	Laminin N-terminal domain-containing protein.	Laminin, gamma 3.	0.655
ENSCVAP00000009772	lamc1	ENSCVAP00000009772	ENSCVAP00000025036	Laminin N-terminal domain-containing protein.	Laminin, gamma 1.	0.655
ENSCVAP00000009772	lamc2	ENSCVAP00000009772	ENSCVAP00000009810	Laminin N-terminal domain-containing protein.	Laminin, gamma 2.	0.655
ENSCVAP00000012955	ENSCVAP00000004763	ENSCVAP00000012955	ENSCVAP00000004763	Laminin, beta 1b.	Laminin N-terminal domain-containing protein.	0.697
ENSCVAP00000012955	LAMA2	ENSCVAP00000012955	ENSCVAP00000001552	Laminin, beta 1b.	Laminin subunit alpha 2.	0.728
ENSCVAP00000012955	LOC107096811	ENSCVAP00000012955	ENSCVAP00000004784	Laminin, beta 1b.	Laminin, gamma 3.	0.678
ENSCVAP00000012955	lamc1	ENSCVAP00000012955	ENSCVAP00000025036	Laminin, beta 1b.	Laminin, gamma 1.	0.678
ENSCVAP00000012955	lamc2	ENSCVAP00000012955	ENSCVAP00000009810	Laminin, beta 1b.	Laminin, gamma 2.	0.678
LAMA2	ENSCVAP00000004763	ENSCVAP00000001552	ENSCVAP00000004763	Laminin subunit alpha 2.	Laminin N-terminal domain-containing protein.	0.789