STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107087248Synemin, intermediate filament protein; Belongs to the intermediate filament family. (1000 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.776
nes
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
0.632
zyx
Zyxin.
     
 0.560
ENSCVAP00000012603
PALM2-AKAP2 fusion.
  
   
 0.552
ranbp2
RAN binding protein 2.
    
 0.529
rbbp5
Retinoblastoma binding protein 5.
    
 0.431
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.429
ENSCVAP00000012880
Cnn_1N domain-containing protein.
   
 0.427
Tep1
Uncharacterized protein.
   
 0.427
ENSCVAP00000015184
TROVE domain-containing protein.
   
 0.427
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.