Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSBN1LUncharacterized protein. (1244 aa)    
Predicted Functional Partners:
THUMPD2
THUMP domain containing 2.
      
 0.543
ENSCVAP00000014798
DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.
    
   0.515
LOC107086468
Ribosomal protein L26.
    
   0.474
LOC107088889
Si:ch211-127d4.3.
      
 0.472
ncapd2
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.
      
 0.467
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
      
 0.466
abca12
ATP-binding cassette, sub-family A (ABC1), member 12.
      
 0.466
bcas2
BCAS2 pre-mRNA processing factor.
      
 0.464
smc2
Structural maintenance of chromosomes protein.
    
 
 0.441
stam2
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.
      
 0.425
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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