galt protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

galt

Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family. (364 aa)

Predicted Functional Partners:

gale

0.999

galk1

0.999

Galk2

0.997

ENSCVAP00000003336

0.989

ugp2

0.989

TGDS

0.984

ENSCVAP00000018576

0.984

ENSCVAP00000000311

0.920

pgm3

0.916

ENSCVAP00000010252

0.906

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000000311	galt	ENSCVAP00000000311	ENSCVAP00000001568	Interleukin 11a.	Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.	0.920
ENSCVAP00000003336	Galk2	ENSCVAP00000003336	ENSCVAP00000028403	UDP-glucose pyrophosphorylase 2.	GalKase_gal_bdg domain-containing protein.	0.655
ENSCVAP00000003336	TGDS	ENSCVAP00000003336	ENSCVAP00000009075	UDP-glucose pyrophosphorylase 2.	TDP-glucose 4,6-dehydratase.	0.514
ENSCVAP00000003336	gale	ENSCVAP00000003336	ENSCVAP00000007125	UDP-glucose pyrophosphorylase 2.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.986
ENSCVAP00000003336	galk1	ENSCVAP00000003336	ENSCVAP00000021185	UDP-glucose pyrophosphorylase 2.	Galactokinase 1.	0.646
ENSCVAP00000003336	galt	ENSCVAP00000003336	ENSCVAP00000001568	UDP-glucose pyrophosphorylase 2.	Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.	0.989
ENSCVAP00000003336	pgm3	ENSCVAP00000003336	ENSCVAP00000005402	UDP-glucose pyrophosphorylase 2.	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family.	0.741
ENSCVAP00000003336	ugp2	ENSCVAP00000003336	ENSCVAP00000013632	UDP-glucose pyrophosphorylase 2.	UTP--glucose-1-phosphate uridylyltransferase.	0.901
ENSCVAP00000010252	ENSCVAP00000018576	ENSCVAP00000010252	ENSCVAP00000018576	Uncharacterized protein.	Uncharacterized protein.	0.641
ENSCVAP00000010252	gale	ENSCVAP00000010252	ENSCVAP00000007125	Uncharacterized protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.708
ENSCVAP00000010252	galt	ENSCVAP00000010252	ENSCVAP00000001568	Uncharacterized protein.	Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.	0.906
ENSCVAP00000010252	pgm3	ENSCVAP00000010252	ENSCVAP00000005402	Uncharacterized protein.	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family.	0.780
ENSCVAP00000018576	ENSCVAP00000010252	ENSCVAP00000018576	ENSCVAP00000010252	Uncharacterized protein.	Uncharacterized protein.	0.641
ENSCVAP00000018576	Galk2	ENSCVAP00000018576	ENSCVAP00000028403	Uncharacterized protein.	GalKase_gal_bdg domain-containing protein.	0.982
ENSCVAP00000018576	gale	ENSCVAP00000018576	ENSCVAP00000007125	Uncharacterized protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.741
ENSCVAP00000018576	galk1	ENSCVAP00000018576	ENSCVAP00000021185	Uncharacterized protein.	Galactokinase 1.	0.989
ENSCVAP00000018576	galt	ENSCVAP00000018576	ENSCVAP00000001568	Uncharacterized protein.	Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.	0.984
ENSCVAP00000018576	pgm3	ENSCVAP00000018576	ENSCVAP00000005402	Uncharacterized protein.	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family.	0.449
Galk2	ENSCVAP00000003336	ENSCVAP00000028403	ENSCVAP00000003336	GalKase_gal_bdg domain-containing protein.	UDP-glucose pyrophosphorylase 2.	0.655
Galk2	ENSCVAP00000018576	ENSCVAP00000028403	ENSCVAP00000018576	GalKase_gal_bdg domain-containing protein.	Uncharacterized protein.	0.982