Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001574Uncharacterized protein. (346 aa)    
Predicted Functional Partners:
cdyl
Chromodomain protein, Y-like.
   
 0.627
CDYL2
Chromodomain Y like 2.
   
 0.627
appl2
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
    
   0.459
APPL1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
   0.459
ENSCVAP00000006612
JmjC domain-containing protein.
    
 0.447
LOC107082570
Lysine (K)-specific demethylase 6B, b.
    
 0.447
kdm6b
Lysine (K)-specific demethylase 6B, a.
    
 0.447
kdm6a
Lysine (K)-specific demethylase 6A, like.
    
 0.447
ENSCVAP00000024223
TPR_REGION domain-containing protein.
    
 0.447
eed
Embryonic ectoderm development.
    
 0.445
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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