Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
msx1Muscle segment homeobox 1a. (277 aa)    
Predicted Functional Partners:
LOC107100901
Homeobox domain-containing protein.
   
 
 0.832
bmp4
Bone morphogenetic protein 4.
    
 0.807
e2f4
E2F transcription factor 4.
   
  
 0.800
pax9
Paired box 9.
    
 
 0.776
LOC107096942
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
 0.722
LOC107085711
Forkhead box E3.
    
 
 0.716
snai2
Snail family zinc finger 2.
      
 0.696
zic1
Zic family member 1 (odd-paired homolog, Drosophila).
    
 
 0.687
foxd3
Forkhead box D3.
      
 0.677
LOC107096868
Bone morphogenetic protein 16.
    
 0.668
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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