STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107094608Uncharacterized protein. (1291 aa)    
Predicted Functional Partners:
tcf20
Transcription factor 20.
  
  0.543
LOC107084129
Uncharacterized protein.
  
 
   0.514
LOC107093706
Uncharacterized protein.
    
  0.471
LOC107090990
Si:ch211-168f7.5.
  
     0.459
stn1
STN1 subunit of CST complex.
    
  0.428
LOC107089554
Fibronectin type-III domain-containing protein.
  
   
 0.426
LOC107091999
KH and NYN domain containing.
  
     0.415
LOC107086823
C2H2-type domain-containing protein.
  
 
  0.414
LOC107099072
Si:ch73-290k24.6.
  
 
  0.409
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.