Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107094608Uncharacterized protein. (1291 aa)    
Predicted Functional Partners:
LOC107093706
Uncharacterized protein.
    
  0.631
ENSCVAP00000010205
Uncharacterized protein.
    
  0.624
Pot1
Telo_bind domain-containing protein.
    
  0.624
Terf2
Uncharacterized protein.
    
  0.584
ten1
TEN1 subunit of CST complex.
     
  0.575
terf1
Telomeric repeat binding factor (NIMA-interacting) 1.
     
  0.551
tinf2
TERF1 (TRF1)-interacting nuclear factor 2.
     
 
0.540
tcf20
Transcription factor 20.
  
 0.524
LOC107084129
Uncharacterized protein.
  
 
   0.513
LOC107090990
Si:ch211-168f7.5.
  
     0.459
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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