LOC107092808 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC107092808

FAM20C golgi associated secretory pathway kinase a. (565 aa)

Predicted Functional Partners:

fam20a

0.929

pcsk9

0.811

fgf23

0.798

LOC107087175

0.743

ENSCVAP00000027183

0.743

LOC107082275

0.725

ENSCVAP00000017905

0.725

ckap4

0.680

LOC107085590

0.655

NUCB2

0.655

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000017905	LOC107082275	ENSCVAP00000017905	ENSCVAP00000017887	Fibrinogen C-terminal domain-containing protein.	Fib_alpha domain-containing protein.	0.886
ENSCVAP00000017905	LOC107092808	ENSCVAP00000017905	ENSCVAP00000001593	Fibrinogen C-terminal domain-containing protein.	FAM20C golgi associated secretory pathway kinase a.	0.725
ENSCVAP00000027183	LOC107092808	ENSCVAP00000027183	ENSCVAP00000001593	annotation not available	FAM20C golgi associated secretory pathway kinase a.	0.743
ENSCVAP00000027183	ckap4	ENSCVAP00000027183	ENSCVAP00000010100	annotation not available	Uncharacterized protein.	0.492
ENSCVAP00000027183	fgf23	ENSCVAP00000027183	ENSCVAP00000028227	annotation not available	Fibroblast growth factor 23; Belongs to the heparin-binding growth factors family.	0.603
LOC107082275	ENSCVAP00000017905	ENSCVAP00000017887	ENSCVAP00000017905	Fib_alpha domain-containing protein.	Fibrinogen C-terminal domain-containing protein.	0.886
LOC107082275	LOC107092808	ENSCVAP00000017887	ENSCVAP00000001593	Fib_alpha domain-containing protein.	FAM20C golgi associated secretory pathway kinase a.	0.725
LOC107085590	LOC107092808	ENSCVAP00000022377	ENSCVAP00000001593	Nucleobindin 2a.	FAM20C golgi associated secretory pathway kinase a.	0.655
LOC107087175	LOC107092808	ENSCVAP00000002161	ENSCVAP00000001593	Fam20C domain-containing protein.	FAM20C golgi associated secretory pathway kinase a.	0.743
LOC107087175	ckap4	ENSCVAP00000002161	ENSCVAP00000010100	Fam20C domain-containing protein.	Uncharacterized protein.	0.492
LOC107087175	fgf23	ENSCVAP00000002161	ENSCVAP00000028227	Fam20C domain-containing protein.	Fibroblast growth factor 23; Belongs to the heparin-binding growth factors family.	0.603
LOC107092808	ENSCVAP00000017905	ENSCVAP00000001593	ENSCVAP00000017905	FAM20C golgi associated secretory pathway kinase a.	Fibrinogen C-terminal domain-containing protein.	0.725
LOC107092808	ENSCVAP00000027183	ENSCVAP00000001593	ENSCVAP00000027183	FAM20C golgi associated secretory pathway kinase a.	annotation not available	0.743
LOC107092808	LOC107082275	ENSCVAP00000001593	ENSCVAP00000017887	FAM20C golgi associated secretory pathway kinase a.	Fib_alpha domain-containing protein.	0.725
LOC107092808	LOC107085590	ENSCVAP00000001593	ENSCVAP00000022377	FAM20C golgi associated secretory pathway kinase a.	Nucleobindin 2a.	0.655
LOC107092808	LOC107087175	ENSCVAP00000001593	ENSCVAP00000002161	FAM20C golgi associated secretory pathway kinase a.	Fam20C domain-containing protein.	0.743
LOC107092808	NUCB2	ENSCVAP00000001593	ENSCVAP00000028166	FAM20C golgi associated secretory pathway kinase a.	Nucleobindin 2.	0.655
LOC107092808	ckap4	ENSCVAP00000001593	ENSCVAP00000010100	FAM20C golgi associated secretory pathway kinase a.	Uncharacterized protein.	0.680
LOC107092808	fam20a	ENSCVAP00000001593	ENSCVAP00000017669	FAM20C golgi associated secretory pathway kinase a.	FAM20A golgi associated secretory pathway pseudokinase.	0.929
LOC107092808	fgf23	ENSCVAP00000001593	ENSCVAP00000028227	FAM20C golgi associated secretory pathway kinase a.	Fibroblast growth factor 23; Belongs to the heparin-binding growth factors family.	0.798