STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107092861C2H2-type domain-containing protein. (590 aa)    
Predicted Functional Partners:
ENSCVAP00000019898
Uncharacterized protein.
      
 0.609
sgsm3
Small G protein signaling modulator 3.
      
 0.578
fign
Fidgetin; Belongs to the AAA ATPase family.
      
 0.550
LOC107086621
AAA domain-containing protein.
      
 0.550
scaper
S-phase cyclin A-associated protein in the ER.
      
 0.546
BCL11B
BAF chromatin remodeling complex subunit BCL11B.
     
 0.510
ccnq
Cyclin Q; Belongs to the cyclin family.
      
 0.485
noc4l
Nucleolar complex associated 4 homolog.
      
 0.483
zmynd11
Zinc finger, MYND-type containing 11.
      
 0.483
slc22a15
Solute carrier family 22 member 15.
      
 0.483
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.