Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC107092861C2H2-type domain-containing protein. (590 aa)    
Predicted Functional Partners:
sgsm3
Small G protein signaling modulator 3.
      
 0.756
ENSCVAP00000019898
Uncharacterized protein.
      
 0.746
noc4l
Nucleolar complex associated 4 homolog.
      
 0.684
dpy19l4
Uncharacterized protein.
      
 0.671
HABP4
Hyaluronan binding protein 4.
      
 0.665
zmynd11
Zinc finger, MYND-type containing 11.
      
 0.645
scaper
S-phase cyclin A-associated protein in the ER.
      
 0.622
ccnq
Cyclin Q; Belongs to the cyclin family.
      
 0.612
slc22a15
Solute carrier family 22 member 15.
      
 0.607
Gk5
FGGY_C domain-containing protein.
      
 0.606
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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