STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
foxd3Forkhead box D3. (396 aa)    
Predicted Functional Partners:
LOC107096661
SRY-box transcription factor 10.
    
 0.948
snai2
Snail family zinc finger 2.
   
 
 0.794
LOC107082335
Melanocyte inducing transcription factor a.
    
 0.762
kat6a
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.762
brpf1
Uncharacterized protein.
      
 0.760
zic1
Zic family member 1 (odd-paired homolog, Drosophila).
   
 0.747
disp1
Dispatched homolog 1 (Drosophila).
      
 0.715
msx1
Muscle segment homeobox 1a.
      
 0.677
pax3
Paired box 3b.
    
 0.652
LOC107087289
Paired box 3a.
    
 0.652
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.