STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpl42Mitochondrial ribosomal protein L42. (145 aa)    
Predicted Functional Partners:
mrps18c
Mitochondrial ribosomal protein S18C; Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.961
mrpl32
Mitochondrial ribosomal protein L32.
   
 
 0.958
mrps18a
Mitochondrial ribosomal protein S18A.
   
 
 0.952
mrpl41
Mitochondrial ribosomal protein L41.
   
 
 0.948
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
   
 
 0.938
mrpl40
Mitochondrial ribosomal protein L40.
   
 
 0.936
mrpl30
Mitochondrial ribosomal protein L30.
   
   0.926
mrpl52
Mitochondrial ribosomal protein L52.
   
 
 0.925
mrpl13
Mitochondrial ribosomal protein L13.
   
   0.925
chchd1
Coiled-coil-helix-coiled-coil-helix domain containing 1.
   
 
 0.924
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.