Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
R3hcc1R3H domain and coiled-coil containing 1. (367 aa)    
Predicted Functional Partners:
svopl
SVOP-like.
      
 0.745
mocs1
Molybdenum cofactor synthesis 1.
      
 0.607
yipf3
Protein YIPF.
      
 0.604
tsfm
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
    
   0.594
chmp7
Charged multivesicular body protein 7.
      
 0.566
ap1g1
AP-1 complex subunit gamma.
      
 0.556
ddx55
RNA helicase.
      
 0.540
nudt22
Nudix (nucleoside diphosphate linked moiety X)-type motif 22.
      
 0.503
dmap1
DNA methyltransferase 1 associated protein 1.
   
  
 0.491
sord
Sorbitol dehydrogenase.
      
 0.468
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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