STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095775Uncharacterized protein. (497 aa)    
Predicted Functional Partners:
LOC107102428
Uncharacterized protein; Belongs to the cytochrome P450 family.
  
0.937
LOC107094618
Cytochrome P450, family 2, subfamily U, polypeptide 1.
    
 
0.908
ENSCVAP00000013489
PLAT domain-containing protein.
   
 0.903
LOC107098100
EGF-like domain-containing protein.
   
 
 0.903
LOC107088990
Prostaglandin-endoperoxide synthase 1.
   
 
 0.903
LOC107103814
Arachidonate 12-lipoxygenase.
    
  0.902
alox5
Arachidonate 5-lipoxygenase a.
    
  0.902
LOC107082932
Zgc:152891.
    
  0.902
LOC107095866
Uncharacterized protein.
    
  0.902
ptgs2
Prostaglandin-endoperoxide synthase 2b.
   
 
  0.900
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.