Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
luc7l3LUC7-like 3 pre-mRNA splicing factor. (481 aa)    
Predicted Functional Partners:
pnisr
PNN-interacting serine/arginine-rich protein.
   
  
 0.989
rbm25
RNA binding motif protein 25b.
   
 0.971
LOC107103205
RNA binding motif protein 25a.
   
 0.971
htatsf1
HIV-1 Tat specific factor 1.
   
 
 0.931
PNN
Pinin, desmosome associated protein.
   
 
 0.926
Snrnp70
Small nuclear ribonucleoprotein 70 (U1).
   
 0.889
LOC107102968
Zgc:158803.
   
0.885
luc7l
LUC7-like (S. cerevisiae).
   
0.885
LOC107103540
Uncharacterized protein.
   
 0.868
LOC107097557
RNA binding motif protein 39b.
   
 0.868
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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