Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hcfc2Host cell factor C2. (683 aa)    
Predicted Functional Partners:
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
 0.951
bap1
Ubiquitin carboxyl-terminal hydrolase.
    
 0.927
rbbp5
Retinoblastoma binding protein 5.
   
 0.924
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 0.923
ENSCVAP00000000947
Uncharacterized protein.
  
  
 
0.902
hcfc1
Host cell factor C1a.
     
 
0.900
wdr5
WD repeat domain 5.
   
 0.868
setd1a
SET domain containing 1A, histone lysine methyltransferase.
   
 0.855
LOC107091290
SET domain containing 1B, histone lysine methyltransferase a.
   
 0.855
kansl3
KAT8 regulatory NSL complex subunit 3.
   
 0.854
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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