STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cep83Centrosomal protein 83. (662 aa)    
Predicted Functional Partners:
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
   
 0.707
sclt1
Sodium channel and clathrin linker 1.
   
 0.697
cep89
Centrosomal protein 89.
     
 0.672
tubg1
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
    
 0.619
rab3ip
RAB3A interacting protein (rabin3).
     
 0.611
ENSCVAP00000026967
RAB3A interacting protein (rabin3)-like 1.
     
 0.611
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.606
rab11a
RAB11a, member RAS oncogene family.
   
 0.603
LOC107088590
Uncharacterized protein.
   
 0.603
LOC107095311
RAB11B, member RAS oncogene family, b.
   
 0.603
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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