Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nell2Neural EGFL like 2a. (812 aa)    
Predicted Functional Partners:
cunh4orf48
Si:dkeyp-75h12.5.
   
 
 0.620
LOC107104672
Rap guanine nucleotide exchange factor (GEF) 6.
    
 0.569
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
      
 0.535
ubqln4
Ubiquilin 4.
    
 0.524
dbr1
Debranching RNA lariats 1.
    
 
 0.506
LOC107104784
Septin 8a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
    
 
 0.459
s100z
Protein S100; Belongs to the S-100 family.
   
 0.439
fbxw11
F-box and WD repeat domain containing 11b.
    
 0.434
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.431
uhmk1
U2AF homology motif (UHM) kinase 1.
    
 0.429
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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