Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
hps3HPS3 biogenesis of lysosomal organelles complex 2 subunit 1. (1057 aa)    
Predicted Functional Partners:
HPS6
HPS6 biogenesis of lysosomal organelles complex 2 subunit 3.
   
 
 0.989
hps5
Hermansky-Pudlak syndrome 5 protein homolog; May regulate the synthesis and function of lysosomes and of highly specialized organelles, such as melanosomes and platelet dense granules.
   
 
 0.985
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
      
 0.911
bloc1s3
Biogenesis of lysosome-related organelles complex 1 subunit 3; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO). Belongs to the BLOC1S3 family.
      
 0.799
hps1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
      
 0.775
dtnbp1
Dystrobrevin binding protein 1b.
      
 0.757
bloc1s6
Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO), such as platelet dense granules and melanosomes. In concert with the AP-3 complex, the BLOC-1 complex is required to target membrane protein cargos into vesicles assembled at cell bodies for delivery into neurites and nerve terminals. The BLOC-1 complex, in association with SNARE proteins, is also proposed to be involved in neurite extension. May play a role in intracellular vesicle trafficking, particular [...]
      
 0.745
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
      
 0.719
ap3d1
Adaptor related protein complex 3 subunit delta 1.
      
 0.717
ENOSF1
YES proto-oncogene 1, Src family tyrosine kinase.
      
 0.702
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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