STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRPC6ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family. (880 aa)    
Predicted Functional Partners:
trpv4
Transient receptor potential cation channel, subfamily V, member 4; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.554
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
  
 
0.484
trpm2
Transient receptor potential cation channel, subfamily M, member 2.
    
 0.446
LOC107087798
Stromal interaction molecule 1a.
    
 0.434
LOC107082893
Stromal interaction molecule 1b.
    
 0.434
LOC107087310
Stromal interaction molecule 2b.
    
 0.434
LOC107099484
SAM domain-containing protein.
    
 0.434
ENSCVAP00000021102
MH2 domain-containing protein.
   
 0.425
trpa1
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.423
LOC107088450
Mothers against decapentaplegic homolog.
   
 0.409
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.