Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC107090626Uncharacterized protein. (130 aa)    
Predicted Functional Partners:
LOC107102591
Ubiquinol-cytochrome c reductase complex assembly factor 2.
   
 
 0.966
ENSCVAP00000020445
Si:ch211-231f6.6.
    
 
 0.932
LOC107082698
Cytochrome c oxidase assembly factor COX18.
     
 0.787
tmem177
Transmembrane protein 177.
     
 0.763
ZNHIT1
Zinc finger HIT-type containing 1.
     
  0.575
LOC107093165
Cytochrome C oxidase assembly factor 3a.
   
 
 0.573
LOC107101126
Cytochrome c oxidase assembly factor COX14.
     
 0.546
LOC107087943
Ubiquinol-cytochrome c reductase complex assembly factor 1.
    
 
 0.539
LOC107104377
Family with sequence similarity 83 member C.
    
 
 0.539
cmc1
COX assembly mitochondrial protein.
     
 0.515
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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