Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
raver2Ribonucleoprotein, PTB-binding 2. (665 aa)    
Predicted Functional Partners:
cnot11
CCR4-NOT transcription complex, subunit 11.
   
   0.943
cnot10
CCR4-NOT transcription complex, subunit 10.
    
   0.927
cnot8
CCR4-NOT transcription complex, subunit 8.
    
 
 0.782
LOC107082365
CCR4-NOT transcription complex, subunit 7.
    
 
 0.782
LOC107088613
Polypyrimidine tract binding protein 2b.
   
 0.781
ENSCVAP00000018298
Uncharacterized protein.
   
 0.781
ptbp3
Uncharacterized protein.
   
 0.781
ptbp1
Polypyrimidine tract binding protein 1a.
   
 0.781
cnot1
CCR4-NOT transcription complex, subunit 1.
   
   0.777
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
    0.736
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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