STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raver2Ribonucleoprotein, PTB-binding 2. (665 aa)    
Predicted Functional Partners:
LOC107084591
Vinculin a.
    
 
 0.812
ENSCVAP00000021860
Uncharacterized protein.
    
 
 0.812
vcl
Vinculin b.
    
 
 0.812
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
    0.730
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.653
marchf11
Membrane-associated ring finger (C3HC4) 11.
      
 0.571
ENSCVAP00000011078
Flavodoxin-like domain-containing protein.
   
    0.564
ppp1r26
Uncharacterized protein.
  
   0.563
eprs1
Glutamyl-prolyl-tRNA synthetase.
   
 
 0.535
srsf2
Serine and arginine rich splicing factor 2a.
     
 0.506
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.