Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sox2SRY-box transcription factor 2. (246 aa)    
Predicted Functional Partners:
LOC107088696
POU domain, class 5, transcription factor 3.
    
 0.923
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.788
sall4
Spalt-like transcription factor 4.
   
 0.773
LOC107098273
Kruppel-like factor 17.
    
 0.652
LOC107094847
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 0.619
zeb1
Zinc finger E-box binding homeobox 1b.
    
 0.606
LOC107084690
Lin-28 homolog A.
    
 0.579
prdm14
PR domain containing 14.
    
 0.577
msi1
Musashi RNA binding protein 1.
   
 
 0.573
LOC107096942
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
 0.555
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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