STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107093176Copine I. (563 aa)    
Predicted Functional Partners:
prkrip1
PRKR interacting protein 1.
      
 0.566
nfs1
NFS1 cysteine desulfurase.
 
    
 0.553
rnaseh2b
Ribonuclease H2, subunit B.
   
 
 0.532
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.491
glrx5
Glutaredoxin 5 homolog (S. cerevisiae).
      
 0.491
LOC107093171
Fer-1 like family member 4.
 
 
  
 0.486
llgl2
LLGL scribble cell polarity complex component 2.
      
 0.467
otud7a
OTU deubiquitinase 7A.
   
  
 0.400
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.