STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107096218Glucuronokinase with putative uridyl pyrophosphorylase. (536 aa)    
Predicted Functional Partners:
has2
Hyaluronan synthase 2.
  
 
 0.621
pgk1
Phosphoglycerate kinase.
  
 
 0.608
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
     
 0.602
psat1
Phosphoserine aminotransferase.
    
 0.599
ENSCVAP00000016793
Enolase-phosphatase 1.
     
 0.559
LOC107099816
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.501
chsy1
Hexosyltransferase.
   
  
 0.501
gpi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.501
gapdhs
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.462
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.462
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.