Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fbxw9F-box and WD repeat domain containing 9. (576 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.867
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.855
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.829
rictor
RPTOR independent companion of MTOR, complex 2 a.
    
 
 0.739
cdc6
Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.
    
 
 0.728
LOC107099750
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.707
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.707
ccdc22
Coiled-coil domain containing 22.
    
  0.694
mtor
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
   
 
 0.647
commd1
Copper metabolism (Murr1) domain containing 1.
    
  0.645
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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