STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fahFumarylacetoacetase. (294 aa)    
Predicted Functional Partners:
gstz1
Glutathione S-transferase zeta 1; Belongs to the GST superfamily.
 
 
 0.993
Fahd1
Fumarylacetoacetate hydrolase domain containing 1.
     
 0.958
ENSCVAP00000005887
XPGI domain-containing protein.
   
 
 0.935
hgd
Homogentisate 1,2-dioxygenase.
  
 
 0.915
rag2
Recombination activating gene 2.
      
 0.856
LOC107092762
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.854
LOC107090343
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.852
sdha
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
  
 
 0.837
Fh
Lyase_1 domain-containing protein.
  
 0.834
LOC107092608
Glutathione S-transferase rho; Belongs to the GST superfamily.
  
 
 0.830
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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