STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
osbpl6Oxysterol-binding protein; Belongs to the OSBP family. (921 aa)    
Predicted Functional Partners:
vapb
MSP domain-containing protein.
    
 0.572
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 0.572
LOC107101132
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 0.572
asb16
Ankyrin repeat and SOCS box containing 16.
    
 
 0.495
ccdc126
Coiled-coil domain containing 126.
      
 0.495
mospd1
Motile sperm domain containing 1.
    
 0.484
lrrc20
Leucine rich repeat containing 20.
      
 0.482
LOC107092463
Leucine rich repeat containing 14B.
      
 0.482
LOC107085158
Leucine rich repeat containing 38b.
      
 0.450
LOC107097446
Ankyrin repeat and SOCS box-containing 12a.
    
 
 0.431
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.