Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC107091169ATPase family AAA domain containing 5a. (1526 aa)    
Predicted Functional Partners:
rfc4
Replication factor C (activator 1) 4.
   
 0.995
rfc5
Replication factor C (activator 1) 5.
   
 0.994
rfc2
Replication factor C (activator 1) 2.
   
 0.985
rfc3
Replication factor C (activator 1) 3.
   
 0.984
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.982
wdhd1
WD repeat and HMG-box DNA binding protein 1.
   
 
 0.973
chtf18
AAA domain-containing protein.
   
 0.971
wdr48
WD repeat domain 48b.
   
 0.969
dscc1
DNA replication and sister chromatid cohesion 1.
   
 0.966
rad17
RAD17 checkpoint clamp loader component.
   
 0.963
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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