Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abcc2Uncharacterized protein. (1568 aa)    
Predicted Functional Partners:
LOC107086567
Uncharacterized protein.
  
  
 
0.900
LOC107100119
ATP-binding cassette, sub-family G (WHITE), member 2a.
  
 0.751
LOC107101853
ABC transporter domain-containing protein.
  
 0.751
LOC107094097
ATP-binding cassette, sub-family G (WHITE), member 2b.
  
 0.751
pdzk1
PDZ domain containing 1.
   
 0.704
nup210
Nucleoporin 210.
   
  
 0.669
ktn1
Kinectin 1.
   
   0.609
abca12
ATP-binding cassette, sub-family A (ABC1), member 12.
  
 0.571
gopc
Golgi-associated PDZ and coiled-coil motif containing.
    
 0.554
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.542
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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