STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107103912RRM domain-containing protein. (288 aa)    
Predicted Functional Partners:
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.806
LOC107101924
RRM domain-containing protein.
   
 0.806
ilf2
Interleukin enhancer binding factor 2.
   
 
 0.803
LOC107100983
Heterogeneous nuclear ribonucleoprotein M.
   
 0.785
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.776
LOC107089377
Uncharacterized protein.
   
 0.762
LOC107090357
Serine and arginine rich splicing factor 1a.
   
 0.762
ilf3
Interleukin enhancer binding factor 3b.
   
 
 0.751
ENSCVAP00000023138
Heterogeneous nuclear ribonucleoprotein K.
   
 0.729
ENSCVAP00000032378
Uncharacterized protein.
   
 0.729
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.