STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001782Collagen, type XI, alpha 1a. (1313 aa)    
Predicted Functional Partners:
tiprl
TIP41, TOR signaling pathway regulator-like (S. cerevisiae).
    
 
 0.672
tbcel
Tubulin folding cofactor E-like b.
      
 0.669
hoxd10
Homeobox D10a.
   
  
 0.592
ndnf
Neuron-derived neurotrophic factor.
      
 0.581
LOC107080665
Valyl-tRNA synthetase 2, mitochondrial (putative).
      
 0.554
vars2
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.515
LOC107086734
TAP binding protein (tapasin), tandem duplicate 2.
    
 0.443
LOC107082241
Si:ch211-154o6.2.
    
 0.418
LOC107099764
Peptidylprolyl isomerase.
   
 
 0.418
LOC107080657
Ral guanine nucleotide dissociation stimulator-like 2.
      
 0.410
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.