LOC107095751 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC107095751

Uncharacterized protein. (102 aa)

Predicted Functional Partners:

synrg

0.950

heatr5b

0.791

LOC107082769

0.652

LOC107095186

0.652

ap4m1

0.652

ap1m1

0.652

AP1M2

0.652

LOC107087306

0.627

LOC107095773

0.627

LOC107103794

0.627

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP1M2	LOC107087306	ENSCVAP00000030818	ENSCVAP00000001145	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.962
AP1M2	LOC107095186	ENSCVAP00000030818	ENSCVAP00000003002	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Adaptor related protein complex 1 subunit mu 3; Belongs to the adaptor complexes medium subunit family.	0.907
AP1M2	LOC107095751	ENSCVAP00000030818	ENSCVAP00000001803	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Uncharacterized protein.	0.652
AP1M2	LOC107095773	ENSCVAP00000030818	ENSCVAP00000001443	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.763
AP1M2	LOC107103794	ENSCVAP00000030818	ENSCVAP00000003847	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.962
AP1M2	ap1m1	ENSCVAP00000030818	ENSCVAP00000009786	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.906
AP1M2	heatr5b	ENSCVAP00000030818	ENSCVAP00000027988	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	HEAT repeat containing 5B.	0.686
AP1M2	synrg	ENSCVAP00000030818	ENSCVAP00000030196	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Synergin, gamma.	0.444
LOC107082769	LOC107087306	ENSCVAP00000001919	ENSCVAP00000001145	Clat_adaptor_s domain-containing protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.763
LOC107082769	LOC107095186	ENSCVAP00000001919	ENSCVAP00000003002	Clat_adaptor_s domain-containing protein.	Adaptor related protein complex 1 subunit mu 3; Belongs to the adaptor complexes medium subunit family.	0.409
LOC107082769	LOC107095751	ENSCVAP00000001919	ENSCVAP00000001803	Clat_adaptor_s domain-containing protein.	Uncharacterized protein.	0.652
LOC107082769	LOC107095773	ENSCVAP00000001919	ENSCVAP00000001443	Clat_adaptor_s domain-containing protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.763
LOC107082769	LOC107103794	ENSCVAP00000001919	ENSCVAP00000003847	Clat_adaptor_s domain-containing protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.762
LOC107082769	ap1m1	ENSCVAP00000001919	ENSCVAP00000009786	Clat_adaptor_s domain-containing protein.	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.407
LOC107082769	heatr5b	ENSCVAP00000001919	ENSCVAP00000027988	Clat_adaptor_s domain-containing protein.	HEAT repeat containing 5B.	0.686
LOC107082769	synrg	ENSCVAP00000001919	ENSCVAP00000030196	Clat_adaptor_s domain-containing protein.	Synergin, gamma.	0.444
LOC107087306	AP1M2	ENSCVAP00000001145	ENSCVAP00000030818	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.962
LOC107087306	LOC107082769	ENSCVAP00000001145	ENSCVAP00000001919	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clat_adaptor_s domain-containing protein.	0.763
LOC107087306	LOC107095186	ENSCVAP00000001145	ENSCVAP00000003002	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Adaptor related protein complex 1 subunit mu 3; Belongs to the adaptor complexes medium subunit family.	0.962
LOC107087306	LOC107095751	ENSCVAP00000001145	ENSCVAP00000001803	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.627