STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107092836Rho GTPase activating protein 17b. (800 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
   
 0.941
LOC107085118
Uncharacterized protein.
   
 0.941
LOC107089879
Angiomotin.
    
 0.931
LOC107082256
Uncharacterized protein.
   
 0.928
LOC107086129
Uncharacterized protein.
   
 0.928
LOC107092536
Rac family small GTPase 1b.
   
 0.928
LOC107083391
Angiomotin like 2b.
    
 0.909
amotl2
Angiomotin like 2a.
    
 0.909
LOC107086260
Rho GTPase activating protein 17.
  
  
 
0.901
rhbdf1
Rhomboid 5 homolog 1a (Drosophila).
   
  
 0.488
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.