STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001823Ring finger protein 123. (405 aa)    
Predicted Functional Partners:
rnf123
Ring finger protein 123.
 
     0.942
ubac1
UBA domain containing 1.
   
 
 0.827
ENSCVAP00000019053
DUSP domain-containing protein.
   
 0.730
ENSCVAP00000032376
USP domain-containing protein; Belongs to the peptidase C19 family.
   
 0.730
usp4
Ubiquitin specific peptidase 4 (proto-oncogene); Belongs to the peptidase C19 family.
   
 0.499
USP15
Ubiquitin specific peptidase 15; Belongs to the peptidase C19 family.
   
 0.499
usp32
Ubiquitin specific peptidase 32; Belongs to the peptidase C19 family.
   
 0.498
LOC107083097
Ubiquitin specific peptidase 31; Belongs to the peptidase C19 family.
   
 0.498
ENSCVAP00000020218
Uncharacterized protein.
   
 0.498
usp43
Ubiquitin specific peptidase 43b; Belongs to the peptidase C19 family.
   
 0.498
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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