STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d16TBC1 domain family, member 16. (748 aa)    
Predicted Functional Partners:
rab4a
RAB4a, member RAS oncogene family.
    
 0.703
LOC107094172
RAB4B, member RAS oncogene family.
    
 0.703
ENSCVAP00000002586
WD_REPEATS_REGION domain-containing protein.
      
 0.666
ENSCVAP00000021526
Uncharacterized protein.
      
 0.666
dgke
Diacylglycerol kinase.
      
 0.663
card14
Caspase recruitment domain family, member 14.
      
 0.643
tbc1d23
TBC1 domain family, member 23.
      
 0.594
wdr5
WD repeat domain 5.
      
 0.574
baiap2l2
BAI1-associated protein 2-like 2b.
      
 0.485
pla2g6
Phospholipase A2, group VI (cytosolic, calcium-independent).
      
 0.485
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.