STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prorpProtein only RNase P catalytic subunit. (608 aa)    
Predicted Functional Partners:
trmt10c
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 0.976
hsd17b10
Hydroxysteroid (17-beta) dehydrogenase 10; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.975
shpk
Sedoheptulokinase.
      
 0.652
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
   
 
 0.647
pop5
Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
      
 0.633
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
   
 
 0.582
ENSCVAP00000001342
Uncharacterized protein.
      
 0.576
harbi1
Harbinger transposase derived 1.
      
 0.558
trmt10b
tRNA methyltransferase 10B.
   
 0.558
trmt10a
tRNA methyltransferase 10A.
   
 0.558
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.