Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
psma6Proteasome subunit alpha type. (246 aa)    
Predicted Functional Partners:
psma2
Proteasome subunit alpha type.
   
0.994
psma3
Proteasome subunit alpha type.
   
0.994
psmb2
Proteasome subunit beta.
   
 0.994
psma5
Proteasome subunit alpha type.
   
0.993
psma4
Proteasome subunit alpha type.
   
0.992
psma1
Proteasome endopeptidase complex.
   
0.992
psmb4
Proteasome subunit beta; Belongs to the peptidase T1B family.
   
 0.991
psmb1
Proteasome subunit beta.
   
 0.991
psmb3
Proteasome subunit beta.
   
 0.991
psma8
Proteasome subunit alpha type.
   
0.985
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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