STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107081991Aspartate aminotransferase. (410 aa)    
Predicted Functional Partners:
LOC107088625
Malate dehydrogenase.
   
 0.983
Mdh2
Ldh_1_N domain-containing protein.
   
 0.983
LOC107094037
Malate dehydrogenase.
   
 0.983
Fh
Lyase_1 domain-containing protein.
   
 0.972
sdha
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
  
 0.972
got2
Aspartate aminotransferase.
  
0.971
LOC107092762
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.968
LOC107090343
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.968
asns
Asparagine synthetase [glutamine-hydrolyzing].
   
 
 0.965
tat
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
   
 0.958
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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