Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000001901Uncharacterized protein. (105 aa)    
Predicted Functional Partners:
ENSCVAP00000012785
Troponin T type 2a (cardiac).
   
 0.958
LOC107089160
Troponin T type 2b (cardiac).
   
 0.958
LOC107099558
Uncharacterized protein.
   
 0.958
LOC107094549
Actin alpha cardiac muscle 1a.
   
 0.937
ACTA1
Actin alpha 1, skeletal muscle.
   
 0.937
LOC107103942
Uncharacterized protein; Belongs to the tropomyosin family.
     
 
0.900
LOC107088037
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.811
ENSCVAP00000008323
Cardiac myosin light chain-1.
   
 0.710
ENSCVAP00000015230
Uncharacterized protein.
   
 0.707
ENSCVAP00000012826
Troponin I type 1a (skeletal, slow).
   
 0.675
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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