STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ern1Endoplasmic reticulum to nucleus signaling 1. (1063 aa)    
Predicted Functional Partners:
xbp1
X-box binding protein 1.
    
 0.955
LOC107092860
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.940
traf2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.940
LOC107084615
Si:ch211-1i11.3.
   
0.932
map3k5
Mitogen-activated protein kinase kinase kinase 5.
   
0.932
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
    
 0.912
LOC107086406
Endoplasmic reticulum to nucleus signaling 2.
  
  
 
0.902
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
   
 0.719
amfr
Autocrine motility factor receptor b.
    
 
 0.584
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.584
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.