ralgapa1 protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ralgapa1

Ral GTPase activating protein, alpha subunit 1 (catalytic). (1989 aa)

Predicted Functional Partners:

ralgapb

0.894

ENSCVAP00000026299

0.894

nkiras2

0.786

LOC107092479

0.661

Gpn1

0.607

INSM2

0.606

mea1

0.591

gfod2

0.589

LOC107086505

0.589

acot8

0.553

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000026299	LOC107086505	ENSCVAP00000026299	ENSCVAP00000023017	Uncharacterized protein.	Glucose-fructose oxidoreductase domain containing 1.	0.622
ENSCVAP00000026299	acot8	ENSCVAP00000026299	ENSCVAP00000000789	Uncharacterized protein.	Acyl-CoA thioesterase 8.	0.568
ENSCVAP00000026299	gfod2	ENSCVAP00000026299	ENSCVAP00000004384	Uncharacterized protein.	Glucose-fructose oxidoreductase domain containing 2.	0.622
ENSCVAP00000026299	nkiras2	ENSCVAP00000026299	ENSCVAP00000025017	Uncharacterized protein.	NFKB inhibitor interacting Ras-like 2.	0.780
ENSCVAP00000026299	ralgapa1	ENSCVAP00000026299	ENSCVAP00000001911	Uncharacterized protein.	Ral GTPase activating protein, alpha subunit 1 (catalytic).	0.894
Gpn1	INSM2	ENSCVAP00000020423	ENSCVAP00000021104	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	INSM transcriptional repressor 2.	0.604
Gpn1	ralgapa1	ENSCVAP00000020423	ENSCVAP00000001911	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	Ral GTPase activating protein, alpha subunit 1 (catalytic).	0.607
INSM2	Gpn1	ENSCVAP00000021104	ENSCVAP00000020423	INSM transcriptional repressor 2.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.604
INSM2	ralgapa1	ENSCVAP00000021104	ENSCVAP00000001911	INSM transcriptional repressor 2.	Ral GTPase activating protein, alpha subunit 1 (catalytic).	0.606
LOC107086505	ENSCVAP00000026299	ENSCVAP00000023017	ENSCVAP00000026299	Glucose-fructose oxidoreductase domain containing 1.	Uncharacterized protein.	0.622
LOC107086505	nkiras2	ENSCVAP00000023017	ENSCVAP00000025017	Glucose-fructose oxidoreductase domain containing 1.	NFKB inhibitor interacting Ras-like 2.	0.642
LOC107086505	ralgapa1	ENSCVAP00000023017	ENSCVAP00000001911	Glucose-fructose oxidoreductase domain containing 1.	Ral GTPase activating protein, alpha subunit 1 (catalytic).	0.589
LOC107086505	ralgapb	ENSCVAP00000023017	ENSCVAP00000025531	Glucose-fructose oxidoreductase domain containing 1.	Ral GTPase activating protein, beta subunit (non-catalytic).	0.622
LOC107092479	ralgapa1	ENSCVAP00000017919	ENSCVAP00000001911	Family with sequence similarity 91 member A1.	Ral GTPase activating protein, alpha subunit 1 (catalytic).	0.661
acot8	ENSCVAP00000026299	ENSCVAP00000000789	ENSCVAP00000026299	Acyl-CoA thioesterase 8.	Uncharacterized protein.	0.568
acot8	ralgapa1	ENSCVAP00000000789	ENSCVAP00000001911	Acyl-CoA thioesterase 8.	Ral GTPase activating protein, alpha subunit 1 (catalytic).	0.553
acot8	ralgapb	ENSCVAP00000000789	ENSCVAP00000025531	Acyl-CoA thioesterase 8.	Ral GTPase activating protein, beta subunit (non-catalytic).	0.568
gfod2	ENSCVAP00000026299	ENSCVAP00000004384	ENSCVAP00000026299	Glucose-fructose oxidoreductase domain containing 2.	Uncharacterized protein.	0.622
gfod2	nkiras2	ENSCVAP00000004384	ENSCVAP00000025017	Glucose-fructose oxidoreductase domain containing 2.	NFKB inhibitor interacting Ras-like 2.	0.642
gfod2	ralgapa1	ENSCVAP00000004384	ENSCVAP00000001911	Glucose-fructose oxidoreductase domain containing 2.	Ral GTPase activating protein, alpha subunit 1 (catalytic).	0.589