STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ralgapa1Ral GTPase activating protein, alpha subunit 1 (catalytic). (1989 aa)    
Predicted Functional Partners:
ralgapb
Ral GTPase activating protein, beta subunit (non-catalytic).
   
0.686
ENSCVAP00000026299
Uncharacterized protein.
   
 0.686
elp3
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
      
 0.664
INSM2
INSM transcriptional repressor 2.
      
 0.664
brms1
BRMS1 transcriptional repressor and anoikis regulator.
      
 0.661
LOC107092479
Family with sequence similarity 91 member A1.
     
 0.653
stmn4
Stathmin; Belongs to the stathmin family.
     
 0.650
khk
Ketohexokinase.
      
 0.643
LOC107100556
Progestin and adipoQ receptor family member 8.
      
 0.540
ENSCVAP00000030860
Uncharacterized protein.
      
 0.540
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.