Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
u2surpU2 snRNP-associated SURP domain containing. (967 aa)    
Predicted Functional Partners:
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.993
rbm17
RNA binding motif protein 17.
   
 0.982
sf3a2
Splicing factor 3a, subunit 2.
    
 0.981
sf3b1
Splicing factor 3b, subunit 1.
   
 0.967
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.944
DHX15
DEAH-box helicase 15.
   
 0.937
sf3a1
Splicing factor 3a, subunit 1.
   
 0.928
sf3b3
Splicing factor 3b, subunit 3.
   
 0.923
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.910
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
   
 
 0.905
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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