Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
LOC107104975CDC42 binding protein kinase beta (DMPK-like). (1193 aa)    
Predicted Functional Partners:
stk38l
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
 
  
  0.843
stk38
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
 
  
  0.839
CDC42
Cell division cycle 42.
   
 0.741
LOC107085118
Uncharacterized protein.
   
 0.741
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 0.710
Rhoh
Ras homolog family member H.
   
 0.689
rhoq
Ras homolog family member Q.
   
 0.689
cep290
Centrosomal protein 290.
    
 0.665
ENSCVAP00000015893
NDK domain-containing protein.
    
 0.644
Nfkbid
ANK_REP_REGION domain-containing protein.
    
 0.639
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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