Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107086142Proline-rich transmembrane protein 1. (241 aa)    
Predicted Functional Partners:
CNIH2
Cornichon family AMPA receptor auxiliary protein 2.
    
 
 0.632
LOC107095392
Cornichon family AMPA receptor auxiliary protein 3.
    
 
 0.632
LOC107099602
Uncharacterized protein.
    
 
 0.502
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
    
 
 0.502
LOC107082163
Calcium channel, voltage-dependent, gamma subunit 8b.
    
 0.483
LOC107088996
Calcium channel, voltage-dependent, gamma subunit 8a.
    
 0.483
prrt4
Uncharacterized protein.
    
 
 0.471
ENSCVAP00000029471
Si:dkey-31f5.11.
    
 
 0.471
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
    
 
 0.461
ENSCVAP00000015893
NDK domain-containing protein.
   
 0.430
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.