STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcolce2Procollagen C-endopeptidase enhancer 2b. (431 aa)    
Predicted Functional Partners:
amn
Amnion associated transmembrane protein.
   
 0.779
tll1
Metalloendopeptidase.
   
0.570
bmp1
Bone morphogenetic protein 1a.
   
0.570
mst1r
Macrophage stimulating 1 receptor b.
    
 0.535
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.535
LOC107097508
Macrophage stimulating 1 receptor a.
    
 0.535
Col22a1
Collagen, type XXII, alpha 1.
    
 0.532
LOC107092678
Metalloendopeptidase.
   
0.529
ENSCVAP00000018789
Collagen, type V, alpha 2a.
   
 0.457
Col5a2
Collagen, type V, alpha 2b.
   
 0.457
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.